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Repository blast_to_scaffold

Name: blast_to_scaffold

Owner: artbio

Synopsis: Generate DNA scaffold from blastn or tblastx alignments of Contigs

Detailed description:

This tool start from DNA contigs that aligned to a subject DNA sequence through blastn or tblastx.
The contigs must be provided in fasta format. The blastn or tblastx output must be tabular, the 12 standard column plus column 13 with the length of the blastn or tblastx subject.
The sequence used to BLAST (blastn or tblastx) the contigs must be provided to serve as a guide to the final assembly
The final assembly is a DNA sequence.
Nucleotides of the guide sequence which were not covered by contigs are in small letters in the output assembly.

Content homepage: http://artbio.fr

Development repository: https://github.com/ARTbio/tools-artbio/tree/main/tools/blast_to_scaffold

Link to this repository: https://toolshed.g2.bx.psu.edu/view/artbio/blast_to_scaffold/3041f611636f

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/artbio/blast_to_scaffold

Type: unrestricted

Revision: 2:3041f611636f

This revision can be installed: True

Times cloned / installed: 894

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
blast_to_scaffold View tool metadata	Generate DNA scaffold from blastn or tblastx alignment of Contigs	1.1.0	16.01