Repository samtools_consensus
Name: samtools_consensus
Owner: iuc
Synopsis: Generate consensus from a SAM, BAM or CRAM file.
This tool generates consensus from a SAM, BAM or CRAM file based on the contents of the alignment records. The consensus is written either as FASTA, FASTQ, or a pileup oriented format. This is selected using the -f FORMAT option.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_consensus
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/samtools_consensus/65edd5a6002e
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/samtools_consensus
Type: unrestricted
Revision: 0:65edd5a6002e
This revision can be installed: True
Times cloned / installed: 1

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
generate consensus from a SAM, BAM or CRAM file 1.22+galaxy1 24.0

Categories
SAM - Tools for manipulating alignments in the SAM format