|Sequencing techniques that probe the 3D organization of the genome generate large amounts of|
data whose processing, analysis and visualization is challenging. Here, we present Hi-C Explorer,
a set of tools for the analysis and visualization of chromosome conformation data. Hi-C explorer
facilitates the creation of contact matrices, correction of contacts, TAD detection, merging,
reordering or chromosomes, conversion from different formats and detection of long-range contacts.
Moreover, it allows the visualization of multiple contact matrices along with other types of data
like genes, compartments, ChIP-seq coverage tracks (and in general any type of genomic scores) and long range contacts.
Repository-Maintainer: Björn Grüning
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hichyperoptdetectloops
|Name||Description||Version||Minimum Galaxy Version|
|optimizes parameters for hicDetectLoops||3.6+galaxy0||16.01|