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Repository vcfbedintersect
Name: vcfbedintersect
Owner: devteam
Synopsis: Intersect VCF and BED datasets
Computes intersection between a VCF dataset and a set of genomic
intervals defined as either a BED dataset (http://genome.ucsc.edu/FAQ/FAQformat.html#format1)
or a manually typed interval (in the form of chr:start-end).
Content homepage: https://github.com/ekg/vcflib
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfbedintersect
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/vcfbedintersect/834e1f313036
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect
Type: unrestricted
Revision: 1:834e1f313036
This revision can be installed: True
Times cloned / installed: 3204
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_vcflib_8a5602bf07 revision 7e67466b033e owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
vcflib 8a5602bf07 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Intersect VCF and BED datasets 0.0.3 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA