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Repository proteore_venn_diagram
Owner: proteore
Synopsis: ProteoRE JVenn Diagram
A tool for processing lists and produces Venn diagrams
Type: unrestricted
Revision: 11:958eb2ea02aa
This revision can be installed: True
Times cloned / installed: 427

Repository README files - may contain important installation or license information

Wrapper for JVenn Diagram Tool

Authors

Philippe Bardou, Jérôme Mariette, Frédéric Escudié, Christophe Djemiel and Christophe Klopp. jvenn: an interactive Venn diagram viewer. BMC Bioinformatics 2014, 15:293 doi:10.1186/1471-2105-15-293

Galaxy integration

T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR

Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit,Migale Bioinformatics platform

Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.


This tool draw a venn diagram from lists/files using Jvenn plug-in (http://jvenn.toulouse.inra.fr/app/index.html). It also creates output files that contain common or specific elements between query and each compared lists/files.

Inputs

  • Query file: A file containing different information of proteins, could be output of previous components.

  • File of a list of IDs: .TXT format, each line contains 1 ID

    AMY1A

    ALB

    IGKC

    CSTA

    IGHA1

    ACTG1

  • List of IDs: IDs separated by a space

    AMY1A ALB IGKC CSTA IGHA1 ACTG1

If you choose a file, it is necessary to specify the column where you would like to perform the comparison.

Outputs

  • Summary file (venn_diagram_summary.html):
    Venn diagram: Could be downloaded as image (PNG, SVG)
  • Venn text output file
    A text file containing common/specific elements among compared lists/files.

Contents of this repository

Name Description Version Minimum Galaxy Version
[JVenn] 2021.05.12 16.01

Categories
Proteomics - Tools enabling the study of proteins