Wrapper for JVenn Diagram Tool

Authors

Philippe Bardou, Jérôme Mariette, Frédéric Escudié, Christophe Djemiel and Christophe Klopp. jvenn: an interactive Venn diagram viewer. BMC Bioinformatics 2014, 15:293 doi:10.1186/1471-2105-15-293

Galaxy integration

T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR

Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit,Migale Bioinformatics platform

Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.

This tool draw a venn diagram from lists/files using Jvenn plug-in (http://jvenn.toulouse.inra.fr/app/index.html). It also creates output files that contain common or specific elements between query and each compared lists/files.

Inputs

• Query file: A file containing different information of proteins, could be output of previous components.

• File of a list of IDs: .TXT format, each line contains 1 ID

  AMY1A

  ALB

  IGKC

  CSTA

  IGHA1

  ACTG1

• List of IDs: IDs separated by a space

  AMY1A ALB IGKC CSTA IGHA1 ACTG1

If you choose a file, it is necessary to specify the column where you would like to perform the comparison.

Outputs

• Summary file (venn_diagram_summary.html):

  Venn diagram: Could be downloaded as image (PNG, SVG)

• Venn text output file

  A text file containing common/specific elements among compared lists/files.