| What it does
GeCos is a tool that calculates the codon composition of any given DNA sequence. Input - If more than one sequence is analyzed at a time, a cutoff value can be used to filter the output. Only the sequences with a higher total score than the cutoff value will be displayed in the output. - The DNA sequence(s), that are supposed to be analyzed with GeCoS need to be formatted as fasta. Output - GeCoS produces a matrix containing the identifier used in the input, the combined score of the sequence and the number of each of the chosen codons. - Total Score = sum of codon occurences / sequence length * number of analyzed codons - The output is sorted from low to high (Total Score: 0 to 1). Example: [['Gene_ID' 'Total Score' 'AGG' 'AGC' 'CCC' 'TGC' 'GCG'] ['CCE57562' 0.0190476 1 3 1 2 1] ['CCQ29559' 0.0190476 0 1 2 2 1] ... ['CCQ31238' 0.0328358 0 3 0 6 2] ['CCE57539' 0.05 2 0 4 3 3]] |
hg clone https://toolshed.g2.bx.psu.edu/repos/jamueller/codon_analysis
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| (GeneCodonSearch) calculates the codon composition in a DNA sequence. | 1.0.0 | 16.01 | |