Galaxy deeptools wrapper
deepTools are user-friendly tools for the normalization and visualization of
They address the challenge of visualizing the large amounts of data that are now
routinely generated from sequencing centers in a meaningful way.
To do so, deepTools contain useful routines to process the mapped reads data
through removal of duplicates and different filtering options to create coverage
files in standard bedGraph and bigWig file formats. deepTools allow the creation
of normalized coverage files or the comparison between two files
(for example, treatment and control). Finally, using such normalized and
standardized files, multiple visualizations can be created to identify
enrichments with functional annotations of the genome.
For a gallery of images that can be produced and a description
of the tools see our poster_.
.. _poster: http://f1000.com/posters/browse/summary/1094053
deeptools is developed under here:
For support or questions please post to `Biostars `__. For bug reports and feature requests please open an issue ``__.
Galaxy should be able to automatically install all other dependencies, such as numpy or scipy.
For the best performance we recommend to install blas/lapack/atlas in your environment before
installing deepTools from the Tool Shed.
deeptools are currently under review. In the meantime please refere to https://github.com/deeptools/deepTools.
* v1.0: Initial public release
* v188.8.131.52: Include new citation tag, update version to 184.108.40.206 and change wrapper version
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