The settings for name, version and type from a contained tool configuration file's requirement tag does not match the information for the following tool dependency definitions in the tool_dependencies.xml file, so these tool dependencies have no relationship with any tools within this repository.
* name: perl, type: package, version: 5.18.1
* name: readPerContig, type: package, version: 1.0
Repository readpercontig_blat
Owner: stheil
Synopsis: Get read number, coverage or rpkm from blat alignment of reads on contigs.
Two simple tools :
readPerContig allows to compute either the number of reads, the coverage, or the rpkm by mapping reads on contig/scaffold using blat.
getSingleton extracts reads that do not match on any contig/scaffold.
Type: unrestricted
Revision: 2:ea81b455dbf6
This revision can be installed: True
Times cloned / installed: 104
Dependencies of this repository

Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required)

Name Version Type
perl 5.18.1 package
readPerContig 1.0 package

Contents of this repository

Name Description Version Minimum Galaxy Version
This script counts the number of read per contig using a Blat output. Output is a 2 column tabular file. 1.0 any

Categories
Assembly - Tools for working with assemblies