The settings for name, version and type from a contained tool configuration file's requirement tag does not match the information for the following tool dependency definitions in the tool_dependencies.xml file, so these tool dependencies have no relationship with any tools within this repository.
* name: perl, type: package, version: 5.18.1
* name: readPerContig, type: package, version: 1.0
Repository readpercontig_blat
Name: readpercontig_blat
Owner: stheil
Synopsis: Get read number, coverage or rpkm from blat alignment of reads on contigs.
Two simple tools :
readPerContig allows to compute either the number of reads, the coverage, or the rpkm by mapping reads on contig/scaffold using blat.
getSingleton extracts reads that do not match on any contig/scaffold.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/stheil/readpercontig_blat/ea81b455dbf6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/stheil/readpercontig_blat
Type: unrestricted
Revision: 2:ea81b455dbf6
This revision can be installed: True
Times cloned / installed: 131
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
perl 5.18.1 package
readPerContig 1.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
This script counts the number of read per contig using a Blat output. Output is a 2 column tabular file. 1.0 any

Categories
Assembly - Tools for working with assemblies