Repository ssr_marker_design
Name: ssr_marker_design
Owner: john-mccallum
Synopsis: SSR detection and marker design using MISA Tools
Wrappers for the MISA (MISA - MIcroSAtellite identification tool) scripts for detection of simple sequence repeats and PCR primer dset design
Link to this repository: https://toolshed.g2.bx.psu.edu/view/john-mccallum/ssr_marker_design/16b5aa275b42
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/john-mccallum/ssr_marker_design
Type: unrestricted
Revision: 2:16b5aa275b42
This revision can be installed: True
Times cloned / installed: 968

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
convert MISA to gvf/gff3 1.0.0 any
Detect simple sequence repeats using MISA 1.0.0 any
Removes fasta description fields in header 1.0.0 any
Design primer sets using MISA output 1.0.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA