This repository has been marked as deprecated, so some tool shed features may be restricted.
Repository blastn_to_scaffold
Name: blastn_to_scaffold
Owner: drosofff
Synopsis: Generate DNA scaffold from blastn alignment of Contigs
This tool start from DNA contigs that aligned to a subject DNA sequence through blastn.
The contigs must be provided in fasta format. The blastn output must be tabular, the 12 standard column plus column 13 with the length of the blastn subject.
The sequence used to blastn the contigs must be provided to serve as a guide to the final assembly
The final assembly is a DNA sequence.
Nucleotides of the guide sequence which were not covered by contigs are in small letters in the output assembly.
Content homepage: http://artbio.fr
Development repository: https://github.com/ARTbio/tools-artbio/tree/master/tools/blastn_to_scaffold
Link to this repository: https://toolshed.g2.bx.psu.edu/view/drosofff/blastn_to_scaffold/ad9a1c117ac6
Type: unrestricted
Revision: 0:ad9a1c117ac6
This revision can be installed: True
Times cloned / installed: 139

Contents of this repository

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Name Description Version Minimum Galaxy Version
Generate DNA scaffold from blastn alignment of Contigs 0.1.0 any

Categories
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Assembly - Tools for working with assemblies