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Repository motif_tools

Name: motif_tools

Owner: pjbriggs

Synopsis: Simple motif finding utilities

Detailed description:

Set of simple motif finding utilities by Ian Donaldson:

- Get all matches to a given IUPAC in GFF format
- Counts the matches to a given IUPAC
- Get non-redundant count of sequences
- Identify clusters of two and three TFBS

Development repository: https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/tools/motif_tools

Link to this repository: https://toolshed.g2.bx.psu.edu/view/pjbriggs/motif_tools/856008c4a5f3

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/pjbriggs/motif_tools

Type: unrestricted

Revision: 3:856008c4a5f3

This revision can be installed: True

Times cloned / installed: 166

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
IUPAC scan and output each match View tool metadata	Returns all matches to a given IUPAC in GFF format	1.0.2	16.01
IUPAC scan and output matches per seq View tool metadata	Counts the matches to a given IUPAC	1.0.2	16.01
TFBScluster two TFBS View tool metadata	Identifies clusters of two TFBS	1.0.2	16.01
Count unique seq in GFF View tool metadata	Gives the non-redundant count of sequences	1.0.2	16.01
TFBScluster three TFBS View tool metadata	Identifies clusters of three TFBS	1.0.2	16.01