Snippy finds variants between a haploid reference genome and your NGS sequence reads. It will find both substitutions and insertions/deletions (indels). |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snippy
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. | 4.6.0+galaxy0 | 16.01 | |
Replace any non-standard sequence characters in snippy 'core.full.aln' file. | 4.6.0+galaxy0 | 16.01 | |
Combine multiple Snippy outputs into a core SNP alignment | 4.6.0+galaxy0 | 16.01 |