Repository glimmer
Name: glimmer
Owner: crs4
Synopsis: Glimmer
Wrappers for Glimmer, a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses. Glimmer (Gene Locator and Interpolated Markov ModelER) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA.
This repository contains wrappers for anomaly, build-icm, extract, glimmer3 and long-orfs. A sample workflow is also included.
Development repository: https://bitbucket.org/crs4/orione-tools
Link to this repository: https://toolshed.g2.bx.psu.edu/view/crs4/glimmer/9c8ffce71f7c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/crs4/glimmer
Type: unrestricted
Revision: 0:9c8ffce71f7c
This revision can be installed: True
Times cloned / installed: 180
Dependencies of this repository

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
glimmer 3.02 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
0.2 any
0.2 any
0.2 any
0.2 any
0.2 any

Datatypes
extension type mimetype subclass
glimmer_entropy_profiles galaxy.datatypes.data:Text text/plain True
glimmer_pwm galaxy.datatypes.data:Text text/plain True
glimmer_coords galaxy.datatypes.data:Text text/plain True
glimmer_icm galaxy.datatypes.binary:Binary application/octet-stream True

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis