Repository humann2_rna_dna_norm

Name: humann2_rna_dna_norm

Owner: iuc

Synopsis: Wrapper for the humann2 tool suite: Normalize

Detailed description:

HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways
in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads).
This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community
and its members. More generally, functional profiling answers the question "What are the microbes in my community-of-interest
doing (or capable of doing)?"

Content homepage: http://huttenhower.sph.harvard.edu/humann2

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/humann2_rna_dna_norm/de70d23958de

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/humann2_rna_dna_norm

Type: unrestricted

Revision: 5:de70d23958de

This revision can be installed: True

Times cloned / installed: 1289

Repository README files - may contain important installation or license information

Readme files

Galaxy wrappers for HUMAnN2

Galaxy should be able to automatically install the dependencies, i.e. the HUMAnN2 binaries and its dependencies.

After installation, you must tell Galaxy about the default databases for MetaPhlAn2 and HUMAnN2. You need to use the data managers for that and installing:

MetaPhlAn2 database
HUMAnN2 nucleotide database
HUMAnN2 protein database

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Normalize View tool metadata	combined meta'omic sequencing data	0.11.1.1	16.01