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Repository data_manager_select_index_by_path

Name: data_manager_select_index_by_path

Owner: rhpvorderman

Synopsis: A data manager to register already built indexes in Galaxy's data tables

Detailed description:

This tool can link galaxy to already built indexes on the filesystem.
This tool currently supports the following formats:
  - FASTA (for all_fasta table)
  - Bowtie index
  - Bowtie2 index
  - BWA index
  - Fasta index (.fai)
  - Hisat2 index
  - Kallisto index
  - Picard index
  - GATK sorted picard index
  - bwameth index
  - GTF file
  - Star index
  - Tophat2 index

Content homepage: https://github.com/LUMC/lumc-galaxy-tools

Development repository: https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path

Link to this repository: https://toolshed.g2.bx.psu.edu/view/rhpvorderman/data_manager_select_index_by_path/8495c49cd056

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rhpvorderman/data_manager_select_index_by_path

Type: unrestricted

Revision: 1:8495c49cd056

This revision can be installed: False

Times cloned / installed: 249

Repository README files - may contain important installation or license information

Readme files

This is a fork of the data_manager_all_fasta_by_path data manager by Cristian-B (https://github.com/Christian-B) (https://github.com/Christian-B/galaxy_shedtools/tree/master/all_fasta_by_path). The all_fasta_by_path data manager was forked on 2017-09-07 from Christian-B's galaxy_shedtools repository at commit d9f5343. (https://github.com/Christian-B/galaxy_shedtools). The tool has drastically changed since then, with a complete refactoring of the python script and the addition of unit tests for all functionality within the python script. A lot of indexes are now supported in addition to just the all_fasta one.