|Scanpy is a scalable toolkit for analyzing single-cell gene expression data. It includes|
preprocessing, visualization, clustering, pseudotime and trajectory inference and differential
expression testing. Scanpy-scripts provides a set of command-line wrapper scripts that are
composed from Scanpy API for easy execution of common analysis.
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_mnn
|Name||Description||Version||Minimum Galaxy Version|
|correct batch effects by matching mutual nearest neighbors||1.8.1+galaxy9||18.01|