Repository suite_hicexplorer
Owner: bgruening
Synopsis: HiCExplorer: Set of programs to process, analyze and visualize Hi-C data.
Sequencing techniques that probe the 3D organization of the genome generate large amounts of
data whose processing, analysis and visualization is challenging. Here, we present Hi-C Explorer,
a set of tools for the analysis and visualization of chromosome conformation data. Hi-C explorer
facilitates the creation of contact matrices, correction of contacts, TAD detection, merging,
reordering or chromosomes, conversion from different formats and detection of long-range contacts.
Moreover, it allows the visualization of multiple contact matrices along with other types of data
like genes, compartments, ChIP-seq coverage tracks (and in general any type of genomic scores) and long range contacts.

doi: 10.5281/zenodo.159780

Repository-Maintainer: Björn Grüning

https://github.com/deeptools/HiCExplorer
Type: repository_suite_definition
Revision: 27:648b47e284a0
This revision can be installed: False
Times cloned / installed: 652

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Visualization - Tools for visualizing data