| Utilities for data preprocessing and analysis of RepeatExplorer2 results. |
hg clone https://toolshed.g2.bx.psu.edu/repos/petr-novak/re_utils
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Tool for randomly sampling subsets of reads from large datasets | 1.0.1.3 | 16.01 | |
| 1.0.0.3 | 16.01 | ||
| 1.0.0.3 | 16.01 | ||
| Preprocessing of paired-end reads in FASTQ format including trimming, quality filtering, cutadapt filtering and interlacing. Broken pairs are discarded. | 1.0.0.3 | 16.01 | |
| Tool appending suffix and prefix to sequences names | 1.0.0.4 | 16.01 | |
| Enter fasta file to text window | 1.0.0 | 16.01 | |
| 1.1.1.4 | 16.01 | ||
| Join pared reads into single file | 1.0.0.4 | 16.01 | |
| Simple utility to create visualization of RepeatExplorer conmparative analysis | 1.0.0.3 | 16.01 | |
| Scan clustering results using RepeatMasker against custom database of repeats | 1.0.3.3 | 16.01 | |
| Simple utility to summarize final annotations from RepeatExplorer CLUSTER_TABLE | 1.0.0.3 | 16.01 | |
| Scan paired-end reads for overlap | 1.0.0.3 | 16.01 | |
| Rename sequences using numerical counter, keep required prefix and pair information | 1.0.0.3 | 16.01 | |
| 1.0.0.4 | 16.01 | ||
| Appending suffix and prefix to the read names | 1.0.0.4 | 16.01 | |
| Preprocessing of FASTQ read files including trimming, quality filtering, cutadapt filtering and sampling | 1.0.0.3 | 16.01 | |