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Repository chado_organism_get_organisms
Owner: gga
Synopsis: Chado organism get (from the Chado tool suite)
Galaxy tools allowing to load data into a remote Chado database.

Chado is a member of the GMOD family of tools.

https://github.com/galaxy-genome-annotation/python-chado
Type: unrestricted
Revision: 21:9fcb3c7d6af2
This revision can be installed: True
Times cloned / installed: 943

Repository README files - may contain important installation or license information

Galaxy-chado

Galaxy tools to interface with Tripal using python-chado

Dependencies

You will need to install some python modules in the Galaxy virtualenv for these tools to be fully functional:

. /path/to/galaxy/.venv/bin/activate
pip install future chado
deactivate

Environment

The following environment variables must be set:

ENV Use
$GALAXY_CHADO_DBHOST Host of the Chado database
$GALAXY_CHADO_DBNAME Name of the Chado database
$GALAXY_CHADO_DBUSER Username to connect to the database
$GALAXY_CHADO_DBPASS Password to connect to the database
$GALAXY_CHADO_DBSCHEMA Database schema.
$GALAXY_CHADO_DBPORT Port of the Chado database

License

All python scripts and wrappers are licensed under MIT license.

Contents of this repository

Name Description Version Minimum Galaxy Version
2.3.9+galaxy0 16.01

Categories
Web Services - Tools enabling access to web services