Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository ivar_consensus
Owner: iuc
Synopsis: Wrapper for ivar application: ivar consensus
iVar is a computational package that contains functions broadly useful for
viral amplicon-based sequencing. Additional tools for metagenomic sequencing
are actively being incorporated into iVar. While each of these functions can
be accomplished using existing tools, iVar contains an intersection of
functionality from multiple tools that are required to call iSNVs and
consensus sequences from viral sequencing data across multiple replicates. We
implemented the following functions in iVar: (1) trimming of primers and
low-quality bases, (2) consensus calling, (3) variant calling - both iSNVs and
insertions/deletions, and (4) identifying mismatches to primer sequences and
excluding the corresponding reads from alignment files.
Type: unrestricted
Revision: 16:17f911830a8c
This revision can be installed: False
Times cloned / installed: 2122

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis