| Ribosome profiling provides genome-wide information about translational regulation. However, there is currently no standard tool for the qualitative analysis of Ribo-seq data. We present here RiboTools, a Galaxy toolbox for the analysis of ribosome profiling (Ribo-seq) data. It can be used to detect translational ambiguities, stop codon readthrough events and codon occupancy. It provides a large number of plots for the visualisation of these events. |
hg clone https://toolshed.g2.bx.psu.edu/repos/rlegendre/ribo_tools
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| To compare Ribo-seq alignments between two sets of conditions, to determine codon occupancy | 1.0.0 | any | |
| To calculate the proportion and phasing of each kmer | 1.0.0 | any | |
| To analyse Ribo-seq alignments for the extraction of translational ambiguities | 1.0.0 | any | |
| To analyse Ribo-seq alignments for the detection of stop codon readthrough events | 1.0.0 | any | |