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Repository shovill
Name: shovill
Owner: iuc
Synopsis: Faster de novo assembly pipeline based around Spades
The SPAdes genome assembler has become the de facto standard de novo genome assembler
for Illumina whole genome sequencing data of bacteria and other small microbes.
SPAdes was a major improvement over previous assemblers like Velvet,
but it can be very slow to run and does not handle overlapping paired-end reads well.

Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after
the primary assembly step to get near-identical results in far less time.
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/shovill
Type: unrestricted
Revision: 6:83ead2be47b2
This revision can be installed: True
Times cloned / installed: 1086

Contents of this repository

Name Description Version Minimum Galaxy Version
Faster SPAdes assembly of Illumina reads 1.1.0+galaxy0 16.01

Categories
Assembly - Tools for working with assemblies