|The SPAdes genome assembler has become the de facto standard de novo genome assembler|
for Illumina whole genome sequencing data of bacteria and other small microbes.
SPAdes was a major improvement over previous assemblers like Velvet,
but it can be very slow to run and does not handle overlapping paired-end reads well.
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after
the primary assembly step to get near-identical results in far less time.
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/shovill
|Name||Description||Version||Minimum Galaxy Version|
|Faster SPAdes assembly of Illumina reads||1.1.0+galaxy1||16.01|