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Repository qualimap_suite
Name: qualimap_suite
Owner: joachim-jacob
Synopsis: Quality control and analytics of mapped reads
Qualimap examines sequencing alignment data in SAM/BAM files and provides an overall view of the data that helps to the detect biases in the sequencing and/or mapping of the data and eases decision-making for further analysis. 

http://qualimap.bioinfo.cipf.es/

Garcia-Alcalde et.al, (2012) Qualimap: evaluating next generation sequencing aligmnent data,
Bioinformatics. doi: 10.1093/bioinformatics/bts503 
Link to this repository: https://toolshed.g2.bx.psu.edu/view/joachim-jacob/qualimap_suite/f6ffb9aa409e
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/joachim-jacob/qualimap_suite
Type: unrestricted
Revision: 5:f6ffb9aa409e
This revision can be installed: True
Times cloned / installed: 551

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
to asses mapping quality metrics. 1.0.1 any

Categories
SAM - Tools for manipulating alignments in the SAM format