Repository phephenix
Name: phephenix
Owner: ulfschaefer
Synopsis: Public Health England SNP calling Pipeline
Content homepage: http://phenix.readthedocs.org
Development repository: https://github.com/phe-bioinformatics/PHEnix
Link to this repository: https://toolshed.g2.bx.psu.edu/view/ulfschaefer/phephenix/9c63ab34838d
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ulfschaefer/phephenix
Type: unrestricted
Revision: 19:9c63ab34838d
This revision can be installed: True
Times cloned / installed: 169
Dependencies of this repository

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Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
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Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
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Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_libyaml_0_1_5 revision b36f26f0d34b owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_10_cython_0_23_1 revision 65f6ba2786d0 owned by ulfschaefer (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
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Repository package_freetype_2_5_2_matplotlib_fix revision 26586565bc22 owned by iuc (prior install required)
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Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bintrees 2.0.2 package
biopython 1.66 package
cython 0.23.1 package
matplotlib 1.4 package
phephenix 1.0 package
python 2.7.10 package
pyvcf 0.6.8dev package
pyyaml 3.11 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
filters a VCF file 1.0 any
Takes a set of VCF files and outputs a multi fasta file with only the variant positions. 1.0 any