Repository samtools_view

Name: samtools_view

Owner: iuc

Synopsis: Convert between SAM, BAM, and CRAM format and optionally filtering by various criteria (e.g. flags, quality) of the alignments.

Detailed description:

Convert between SAM, BAM, and CRAM format and optionally filtering
by various criteria (e.g. flags, quality) of the alignments.

Content homepage: http://www.htslib.org/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_view

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/samtools_view/5cf9fcc93508

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/samtools_view

Type: unrestricted

Revision: 20:5cf9fcc93508

This revision can be installed: True

Times cloned / installed: 8017

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
Samtools view View tool metadata	- reformat, filter, or subsample SAM, BAM or CRAM	1.22+galaxy2	24.0

Name

Description

Version

Minimum Galaxy Version

View tool metadata

- reformat, filter, or subsample SAM, BAM or CRAM

1.22+galaxy2

24.0