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Repository protk_proteogenomics
Name: protk_proteogenomics
Owner: iracooke
Synopsis: Proteogenomics tools using protk
Tools for mapping peptides to genomic coordinates
Content homepage: https://github.com/iracooke/protk-galaxytools
Development repository: https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iracooke/protk_proteogenomics/86fd1757f102
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iracooke/protk_proteogenomics
Type: unrestricted
Revision: 3:86fd1757f102
This revision can be installed: True
Times cloned / installed: 365
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ruby_2_0 revision 055f5d2d99b5 owned by iracooke (prior install required)
Repository package_libxml2_2_9_1 revision 8b5c9cb17cb8 owned by iracooke (prior install required)
Repository package_libxml2_2_9_1 revision 8b5c9cb17cb8 owned by iracooke (prior install required)
Repository package_readline_6_2 revision 5313ca2fbce6 owned by iuc (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_blast_plus_2_2_29 revision 18496de7706f owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
blast+ 2.2.29 package
protk 1.4.3 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Select PSMs in a pepXML file matching criteria 1.0.0 any
Convert mzIdentML to protXML 1.0.1 any
Export Proteomics Data to GFF 1.1.0 any
Extract proteins from gff3 and encode genomic coordinates in the fasta header 1.1.1 any

Categories
Proteomics - Tools enabling the study of proteins