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Repository bowtie2
Name: bowtie2
Owner: devteam
Synopsis: Bowtie2: Fast and sensitive read alignment
Bowtie is an ultrafast and memory-efficient tool for aligning sequencing
reads to long reference sequences. It is particularly good at aligning reads of
about 50 up to 100s or 1,000s of characters to relatively long (e.g. mammalian)
genomes. Bowtie 2 supports gapped, local, and paired-end alignment modes. Bowtie
2 outputs alignments in SAM format, enabling interoperation with a large number
of other tools.
Type: unrestricted
Revision: 1:a54de7e658f7
This revision can be installed: True
Times cloned / installed: 17925
Dependencies of this repository

Repository package_bowtie2_2_1_0 revision 017a00c265f1 owned by devteam
Repository package_samtools_0_1_18 revision 171cd8bc208d owned by devteam

Name Version Type
samtools 0.1.18 package
bowtie2 2.1.0 package

Contents of this repository

Name Description Version Minimum Galaxy Version
is a short-read aligner 0.2 any

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data