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Repository bed_to_protein_map
Owner: galaxyp
Synopsis: Converts a BED file to a tabular list of exon locations

Converts a BED file (12 column) to a 6 column tabular list of exon locations
with columns: name,chrom,start,end,strand,cds_start,cds_end.  
It relies on the ThickStart and ThckEnd columns of the BED file to define 
the coding start and end of a protein sequence.

The tabular format can be converted to a sqlite table for the quick lookup of
the genomic location of any animo acid in the protein sequence.
Type: unrestricted
Revision: 0:024ed7b0ad93
This revision can be installed: True
Times cloned / installed: 127

Contents of this repository

Name Description Version Minimum Galaxy Version
genomic location of proteins for MVP 0.1.0 16.01

Categories
Proteomics - Tools enabling the study of proteins