|Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform.|
Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap
|Repository package_samtools_0_1_19 revision c9bd782f5342 owned by iuc (prior install required)|
|Repository package_velvet_1_2_10 revision 93d32326537b owned by devteam|
|Name||Description||Version||Minimum Galaxy Version|
|the Stacks pipeline without a reference genome (denovo_map.pl)||1.40.0||any|