Repository suite_mothur
Name: suite_mothur
Owner: iuc
Synopsis: A suite of tools designed to bring the mothur project into Galaxy.
The mothur project seeks to offers a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
We have incorporated the functionality of dotur, sons, treeclimber, s-libshuff, unifrac, and much more.
In addition to improving the flexibility of these algorithms, we have added a number of other features including calculators and visualization tools.
Content homepage: https://www.mothur.org
Type: repository_suite_definition
Revision: 9:e21dc6f8d8b6
This revision can be installed: True
Times cloned / installed: 1296
Dependencies of this repository

Repository mothur_biom_info revision 3b426f118175 owned by iuc
Repository mothur_make_lefse revision 678c90b43e17 owned by iuc
Repository mothur_create_database revision 34669a26ea47 owned by iuc
Repository mothur_taxonomy_to_krona revision 71e7d93a593e owned by iuc
Repository mothur_sens_spec revision ddda05cfccb4 owned by iuc
Repository mothur_chimera_slayer revision a899cc1416bc owned by iuc
Repository mothur_reverse_seqs revision 03450507aa98 owned by iuc
Repository mothur_pairwise_seqs revision c05906ab8c41 owned by iuc
Repository mothur_get_seqs revision f31e3b8f2336 owned by iuc
Repository mothur_degap_seqs revision a7fced14ce99 owned by iuc
Repository mothur_trim_seqs revision c49a6454726c owned by iuc
Repository mothur_merge_groups revision 052bc33e134e owned by iuc
Repository mothur_make_shared revision b5f98810181e owned by iuc
Repository mothur_remove_rare revision 196b1583580a owned by iuc
Repository mothur_mimarks_attributes revision 247d1bacbefe owned by iuc
Repository mothur_get_dists revision 6936b18e2a9e owned by iuc
Repository mothur_make_contigs revision 4b72b6c43327 owned by iuc
Repository mothur_unique_seqs revision 7c3f9c0850ac owned by iuc
Repository mothur_homova revision 68005ede9e6e owned by iuc
Repository mothur_lefse revision 772e6a5b7358 owned by iuc
Repository mothur_summary_seqs revision 411ddfefe041 owned by iuc
Repository mothur_consensus_seqs revision e432f17722c8 owned by iuc
Repository mothur_libshuff revision eefbe872fd04 owned by iuc
Repository mothur_align_seqs revision 5d134e0b31fd owned by iuc
Repository mothur_trim_flows revision 4d56c7e82ba6 owned by iuc
Repository mothur_summary_single revision 2857a688a7e9 owned by iuc
Repository mothur_make_fastq revision e9b12c5ad27f owned by iuc
Repository mothur_rename_seqs revision 03b326e1f6a1 owned by iuc
Repository mothur_fastq_info revision f02f3ca6dfd1 owned by iuc
Repository mothur_get_communitytype revision beb4e0832f3b owned by iuc
Repository mothur_split_abund revision d850b4b9659d owned by iuc
Repository mothur_pca revision 7474b222205d owned by iuc
Repository mothur_get_relabund revision 7756edb68ddc owned by iuc
Repository mothur_get_label revision bb8b69e90604 owned by iuc
Repository mothur_filter_seqs revision a0ce9fb3f260 owned by iuc
Repository mothur_primer_design revision 6e8cdd7e6825 owned by iuc
Repository mothur_venn revision e4f4c1c0d193 owned by iuc
Repository mothur_remove_groups revision 7c5b7dddd02e owned by iuc
Repository mothur_list_seqs revision ea1a32c7927e owned by iuc
Repository mothur_parsimony revision 65955ae23f29 owned by iuc
Repository mothur_sort_seqs revision cbe644faff63 owned by iuc
Repository mothur_get_coremicrobiome revision ae1411cffbee owned by iuc
Repository mothur_normalize_shared revision ad80d646ed1c owned by iuc
Repository mothur_pre_cluster revision fbbe2b081299 owned by iuc
Repository mothur_screen_seqs revision 94d8dbac60d8 owned by iuc
Repository mothur_unifrac_unweighted revision 3597ca9089a5 owned by iuc
Repository mothur_seq_error revision a03c9ebf1959 owned by iuc
Repository mothur_chimera_ccode revision 79255ca0b19a owned by iuc
Repository mothur_collect_shared revision 9c78c5ffa049 owned by iuc
Repository mothur_remove_lineage revision 2f633c057c0d owned by iuc
Repository mothur_clearcut revision 20e764494303 owned by iuc
Repository mothur_bin_seqs revision 3fc101a0498f owned by iuc
Repository mothur_chimera_bellerophon revision ad0df6ad0499 owned by iuc
Repository mothur_rarefaction_single revision 8091da04fbac owned by iuc
Repository mothur_cluster revision 3bb756df109c owned by iuc
Repository mothur_corr_axes revision 0968daa9b52f owned by iuc
Repository mothur_get_group revision f2b626fe7082 owned by iuc
Repository mothur_make_group revision afc13b55ead3 owned by iuc
Repository mothur_chimera_vsearch revision d531f28e8266 owned by iuc
Repository mothur_anosim revision 652d2803062c owned by iuc
Repository mothur_rarefaction_shared revision 419266a5e29e owned by iuc
Repository mothur_deunique_tree revision 98083c5a4338 owned by iuc
Repository mothur_merge_sfffiles revision ec717c8dce9b owned by iuc
Repository mothur_indicator revision 0232e2fe594c owned by iuc
Repository mothur_dist_shared revision 5d6d9f0d0652 owned by iuc
Repository mothur_classify_tree revision 931e9b25e81d owned by iuc
Repository mothur_filter_shared revision e44c38a17c7a owned by iuc
Repository mothur_get_oturep revision 648b3da84b07 owned by iuc
Repository mothur_remove_seqs revision 2fa446f85b18 owned by iuc
Repository mothur_nmds revision 98f1cc2bc428 owned by iuc
Repository mothur_summary_qual revision d50fdfdc2a0c owned by iuc
Repository mothur_summary_shared revision 74c8ebee088c owned by iuc
Repository mothur_get_otus revision 278a9f09614c owned by iuc
Repository mothur_cooccurrence revision 57fe046c8fbe owned by iuc
Repository mothur_merge_count revision ccba5bd49390 owned by iuc
Repository mothur_align_check revision dd533a49feed owned by iuc
Repository mothur_heatmap_sim revision 0674bdcb3019 owned by iuc
Repository mothur_classify_seqs revision 65b370206748 owned by iuc
Repository mothur_deunique_seqs revision 0369aff1be76 owned by iuc
Repository mothur_chimera_pintail revision cc3eef74fe31 owned by iuc
Repository mothur_make_lookup revision d56e5a7a9cef owned by iuc
Repository mothur_get_groups revision b1c35f71607f owned by iuc
Repository mothur_cluster_classic revision 6ba59950d95c owned by iuc
Repository mothur_amova revision 5aa5d26efeea owned by iuc
Repository mothur_list_otulabels revision 0c9eb32683bf owned by iuc
Repository mothur_get_otulist revision 2478fb777d97 owned by iuc
Repository mothur_cluster_split revision 2c02989afecb owned by iuc
Repository mothur_shhh_seqs revision 6ee54b761c3c owned by iuc
Repository mothur_count_seqs revision f00841c6fc14 owned by iuc
Repository mothur_classify_otu revision 29882f4a1ef3 owned by iuc
Repository mothur_phylotype revision 58f143161d30 owned by iuc
Repository mothur_pcoa revision c9fc98593dec owned by iuc
Repository mothur_mantel revision 17b471efdc40 owned by iuc
Repository mothur_make_biom revision 143cd841de28 owned by iuc
Repository mothur_merge_files revision 12b1bd17d614 owned by iuc
Repository mothur_sffinfo revision 12507ed33710 owned by iuc
Repository mothur_get_otulabels revision 630ad54722c6 owned by iuc
Repository mothur_tree_shared revision 40d8938eaa24 owned by iuc
Repository mothur_pcr_seqs revision 2b8dce0751e5 owned by iuc
Repository mothur_unifrac_weighted revision 136cb4f4b996 owned by iuc
Repository mothur_chimera_check revision 35c91da65b75 owned by iuc
Repository mothur_remove_dists revision ea7b70e1a61b owned by iuc
Repository mothur_otu_hierarchy revision 7590f83a6419 owned by iuc
Repository mothur_count_groups revision dc02f3831a1a owned by iuc
Repository mothur_remove_otus revision ce3c9cb04314 owned by iuc
Repository mothur_chimera_uchime revision 4e3780d096af owned by iuc
Repository mothur_shhh_flows revision 7cca6773bc2a owned by iuc
Repository mothur_cluster_fragments revision 881f9a4013a9 owned by iuc
Repository mothur_heatmap_bin revision 5e6fddbd1366 owned by iuc
Repository mothur_remove_otulabels revision ba9df7320629 owned by iuc
Repository mothur_chop_seqs revision 6e1047fa1a51 owned by iuc
Repository mothur_make_design revision 5280cc8135eb owned by iuc
Repository mothur_split_groups revision 68c20caae797 owned by iuc
Repository mothur_dist_seqs revision 57eb5df69242 owned by iuc
Repository mothur_get_sharedseqs revision 75b80a4fa86d owned by iuc
Repository mothur_get_rabund revision 398973de93ab owned by iuc
Repository mothur_phylo_diversity revision 3868f54b097e owned by iuc
Repository mothur_summary_tax revision 5eb0f670aa35 owned by iuc
Repository mothur_sub_sample revision 34e1fbd32a04 owned by iuc
Repository mothur_collect_single revision 7f212a2a4a3b owned by iuc
Repository mothur_parse_list revision 3b803b7f3388 owned by iuc
Repository mothur_get_mimarkspackage revision 6c54b38dd0da owned by iuc
Repository mothur_metastats revision 10866c1f8e06 owned by iuc
Repository mothur_otu_association revision 0fb08aeb215e owned by iuc
Repository mothur_merge_taxsummary revision 80bd73567a2c owned by iuc
Repository mothur_make_sra revision 33a3f68dc34b owned by iuc
Repository mothur_chimera_perseus revision 128cbea05aeb owned by iuc
Repository mothur_get_lineage revision b2b145255ece owned by iuc
Repository mothur_get_sabund revision c79ecbd31c44 owned by iuc

Categories
Metagenomics - Tools enabling the study of metagenomes