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Repository deseq2
Name: deseq2
Owner: iuc
Synopsis: Differential gene expression analysis based on the negative binomial distribution
Estimate variance-mean dependence in count data from high-throughput sequencing assays and
test for differential expression based on a model using the negative binomial distribution
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/deseq2
Type: unrestricted
Revision: 0:d983d19fbbab
This revision can be installed: True
Times cloned / installed: 6562
Dependencies of this repository

Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_cairo_1_12_14 revision 0a73735c3161 owned by iuc (prior install required)
Repository package_pixman_0_32_6 revision 06f701aa92e2 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_r_3_2_1 revision d9f7d84125b7 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_pixman_0_32_4 revision 32ff063c4de8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)

Name Version Type
deseq2 1.8.1 package

Contents of this repository

Name Description Version Minimum Galaxy Version
Determines differentially expressed features from count tables 2.1.8.0 any

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
RNA - Utilities for RNA
Statistics - Tools for generating statistics