Repository suite_query_tabular
Owner: iuc
Synopsis: A suite of Galaxy tools to filter and query tabular files using SQL
Provides tools for manipulation of tablular files.

A variety of line filters may be applied to each line of a tabular file as it is read.
These filters can be used to select lines, select and reorder columns,
and normalize tabular files for use in a relational database.

Regex regular expression functions re.match, re.search, and re.sub as defined in
SQLite databse connections, so that re.match, re.search, and re.sub can be used in SQL queries.

The Query Tabular Loads tabular files into a new or existing SQLite DB to perform a SQL query
producing a tabular output.   It includes the line filtering options.
The SQLite DB may optionally be saved as an additional output.

The SQLite to Tabular tool performs a query on an existing SQLite DB.

The Filter Tabular tool only uses the filtering options to produce a filtered tabaular output.

http://www.sqlite.org/index.html
https://docs.python.org/release/2.7/library/re.html
Type: repository_suite_definition
Revision: 9:4712dbb7b00d
This revision can be installed: True
Times cloned / installed: 137
Dependencies of this repository

Repository query_tabular revision 33d61c89fb8d owned by iuc
Repository filter_tabular revision 34d29339abab owned by iuc
Repository sqlite_to_tabular revision b722161a845a owned by iuc

Categories
Text Manipulation - Tools for manipulating data