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Repository salmon
Name: salmon
Owner: bgruening
Synopsis: Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves 
 is accuracy and speed via a number of different innovations, including the use of quasi-mapping (accurate but fast-to-compute proxies for 
 traditional read alignments), and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits 
 nicely into many differnt pipelines. For example, you can choose to make use of our quasi-mapping algorithm by providing Salmon with raw 
 sequencing reads, or, if it is more convenient, you can provide Salmon with regular alignments (e.g. an unsorted BAM file produced with 
 your favorite aligner), and it will use the same wicked-fast, state-of-the-art inference algorithm to estimate transcript-level abundances 
 for your experiment.
Type: unrestricted
Revision: 5:53e9709776a0
This revision can be installed: True
Times cloned / installed: 2999

Contents of this repository

Name Description Version Minimum Galaxy Version
Transcript Quantification from RNA-seq data 0.8.2 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
RNA - Utilities for RNA