Repository suite_hicexplorer
Owner: bgruening
Synopsis: HiCExplorer: Set of programs to process, analyze and visualize Hi-C data.
Sequencing techniques that probe the 3D organization of the genome generate large amounts of
data whose processing, analysis and visualization is challenging. Here, we present Hi-C Explorer,
a set of tools for the analysis and visualization of chromosome conformation data. Hi-C explorer
facilitates the creation of contact matrices, correction of contacts, TAD detection, merging,
reordering or chromosomes, conversion from different formats and detection of long-range contacts.
Moreover, it allows the visualization of multiple contact matrices along with other types of data
like genes, compartments, ChIP-seq coverage tracks (and in general any type of genomic scores) and long range contacts.

doi: 10.5281/zenodo.159780

Repository-Maintainer: Björn Grüning
Type: repository_suite_definition
Revision: 13:aa5d613b707a
This revision can be installed: True
Times cloned / installed: 167
Dependencies of this repository

Repository hicexplorer_hicplotmatrix revision c2521cba1c32 owned by bgruening
Repository hicexplorer_hiccomparematrices revision b6c95ff7c3c3 owned by bgruening
Repository hicexplorer_hicaggregatecontacts revision a48457358aa8 owned by bgruening
Repository hicexplorer_hicplotviewpoint revision 67bd57e960a3 owned by bgruening
Repository hicexplorer_hicplotdistvscounts revision d7a84a789c83 owned by bgruening
Repository hicexplorer_hicfindtads revision 78e22ca9f2ce owned by bgruening
Repository hicexplorer_hicbuildmatrix revision 4ceaee0043a5 owned by bgruening
Repository hicexplorer_hicmergematrixbins revision 90645548f8cc owned by bgruening
Repository hicexplorer_hiccorrelate revision 8a5b13451a9e owned by bgruening
Repository hicexplorer_hiccorrectmatrix revision 92fc291ceb1a owned by bgruening
Repository hicexplorer_hictransform revision 09ae55eb26fa owned by bgruening
Repository hicexplorer_hicsummatrices revision 6d1526527417 owned by bgruening
Repository hicexplorer_hicpca revision ebb9b94138c1 owned by bgruening
Repository hicexplorer_hicplottads revision a67942d17a91 owned by bgruening

Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Visualization - Tools for visualizing data