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Repository hicexplorer_hiccorrectmatrix
Owner: bgruening
Synopsis: Wrapper for HiCExplorer: hicCorrectMatrix
Sequencing techniques that probe the 3D organization of the genome generate large amounts of
data whose processing, analysis and visualization is challenging. Here, we present Hi-C Explorer,
a set of tools for the analysis and visualization of chromosome conformation data. Hi-C explorer
facilitates the creation of contact matrices, correction of contacts, TAD detection, merging,
reordering or chromosomes, conversion from different formats and detection of long-range contacts.
Moreover, it allows the visualization of multiple contact matrices along with other types of data
like genes, compartments, ChIP-seq coverage tracks (and in general any type of genomic scores) and long range contacts.

doi: 10.5281/zenodo.159780

Repository-Maintainer: Björn Grüning

https://github.com/deeptools/HiCExplorer
Type: unrestricted
Revision: 13:9949f055db84
This revision can be installed: True
Times cloned / installed: 342

Contents of this repository

Name Description Version Minimum Galaxy Version
run Imakaev's iterative correction over a Hi-C contact matrix. 3.3.1.0 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Visualization - Tools for visualizing data