|RMAP is aimed to map accurately reads from the next-generation|
sequencing technology. RMAP can map reads with or without error probability information
(quality scores) and supports paired-end reads or bisulfite-treated reads mapping.
There is no limitations on read widths or number of mismatches. RMAP can now map
more than 8 million reads in an hour at full sensitivity to 2 mismatches.
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/package_rmap_2_05