Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository stringmlst
Name: stringmlst
Owner: nml
Synopsis: Rapid and accurate identification of the sequence type (ST)
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/nml/stringmlst
Type: unrestricted
Revision: 1:4e03573653fe
This revision can be installed: True
Times cloned / installed: 47

Repository README files - may contain important installation or license information

stringMLST

Fast k-mer based tool for multi locus sequence typing (MLST) stringMLST is a tool for detecting the MLST of an isolate directly from the genome sequencing reads. stringMLST predicts the ST of an isolate in a completely assembly and alignment free manner. The tool is designed in a light-weight, platform-independent fashion with minimum dependencies.

Reference http://jordan.biology.gatech.edu/page/software/stringmlst/

Abstract http://bioinformatics.oxfordjournals.org/content/early/2016/09/06/bioinformatics.btw586.short?rss=1

Application Note http://bioinformatics.oxfordjournals.org/content/early/2016/09/06/bioinformatics.btw586.full.pdf+html

Manual http://jordan.biology.gatech.edu/page/software/stringmlst/stringMLST-useageDocumentation.pdf

Public repository https://github.com/anujg1991/stringMLST

License listed below:

LICENSE TERMS FOR stringMLST

1. INTENT/PURPOSE:

stringMLST is free for academic users and requires permission before any commercial use for any version of this code/algorithm. If you are a commercial user, please contact king.jordan@biology.gatech.edu for permissions.

2. LICENSEE:

Any person or organization who receives the software with a copy of this license.

3. INTELLECTUAL PROPERTY LICENSED:

The rights to use, copy, modify, and compile the software, subject to the restrictions described in the present document.

5. SCOPE OF THE LICENSE

* NON-COMMERCIAL license for research and evaluation purposes ONLY.

* NO right to commercialize the software, or any derivative work,
without separate agreement with the copyright owners.

6. MODIFICATION

* License permits licensee to modify the software for their
research and evaluation purposes.

7. REDISTRIBUTION

* License permits licensee to redistribute verbatim copies
of the software, accompanied with a copy of this license.
* License does not permit licensee to redistribute
modified versions of the software.
* License does not permit licensee to commercialize the software
or any derivative work of the software.

8. FEE/ROYALTY

* Licensee pays no royalty for non-commercial license

* Licensee and any third parties must enter a new agreement
for any use beyond scope of license.

9. NO WARRANTY

The software is provided "as is" without warranty of any kind, either expressed or implied, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose. The entire risk as to the quality and performance of the program is with the Licensee.

10. NO LIABILITY

In no event unless required by applicable law or agreed to in writing will any copyright owner be liable to Licensee for damages, including any general, special, incidental or consequential damages arising out of the use or inability to use the program (including but not limited to loss of data or data being rendered inaccurate or losses sustained by Licensee or third parties or a failure of the program to operate with other programs), even if such holder has been advised of the possibility of such damages.

Contents of this repository

Name Description Version Minimum Galaxy Version
k-mer tool for multilocus sequence typing 1.1.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis