Repository neat_genreads
Owner: thondeboer
Synopsis: NEAT_genReads
Tool that simulates FASTQ reads from error models or VCF file. Provides truth sets for evaluation
Type: unrestricted
Revision: 10:7d10b55965c9
This revision can be installed: True
Times cloned / installed: 27

Contents of this repository

Name Description Version Minimum Galaxy Version
computes empirical fragment length distribution from sample data in BAM format. Creates model file for use in NEAT-genReads 1.0.0 16.04
generates a mutation model based on provided mutations. Creates model file for use in NEAT-genReads 1.0.0 16.04
computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads 1.0.0 16.04
generates sequence error model for genReads. Creates model file for use in NEAT-genReads 1.0.0 16.04
is a fine-grained read simulator 1.0.0 16.04

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data