Repository tophat
Name: tophat
Owner: devteam
Synopsis: Tophat for Illumina
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read
aligner Bowtie, and then analyzes the mapping results to identify splice junctions
between exons. Please cite: Trapnell, C., Pachter, L. and Salzberg, S.L. TopHat:
discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/tophat
Type: unrestricted
Revision: 3:2ad64c5bb5f4
This revision can be installed: True
Times cloned / installed: 3390
Dependencies of this repository

Repository package_bowtie_0_12_7 revision 9f9f38617a98 owned by devteam
Repository package_samtools_0_1_18 revision 171cd8bc208d owned by devteam
Repository package_tophat_1_4_0 revision 0fea0c8cc6cf owned by devteam

Name Version Type
tophat 1.4.0 package
bowtie 0.12.7 package
samtools 0.1.18 package

Contents of this repository

Name Description Version Minimum Galaxy Version
Find splice junctions using RNA-seq data 1.5.0 any

Categories
RNA - Utilities for RNA