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Repository snpsift_dbnsfp_generic
Owner: iuc
Synopsis: snpEff SnpSift dbnsfp generic
Annotates variants on genes using the dbNSFP and similar annotation DBs
Type: unrestricted
Revision: 2:a7cbaf3beadd
This revision can be installed: True
Times cloned / installed: 90

Repository README files - may contain important installation or license information

These are galaxy tools for SnpEff a variant annotation and effect prediction tool by Pablo Cingolani. It annotates and predicts the effects of variants on genes (such as amino acid changes). ( http://snpeff.sourceforge.net/ )

This repository contains a tool_dependencies.xml file that will attempt to automatically install SnpEff and SnpSift.

SnpEff citation: "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process]

SnpSift citation: "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3, 2012.

Contents of this repository

Name Description Version Minimum Galaxy Version
Add Annotations from dbNSFP and similar annotation DBs 4.1.1 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA