Repository revision
0:023c380900ef

Repository 'massbank_ws_searchspectrum'
hg clone https://toolshed.g2.bx.psu.edu/repos/fgiacomoni/massbank_ws_searchspectrum

MassBank spectrum searches tool metadata
Miscellaneous
: Search by pseudo-spectra on a High Quality Mass Spectral Database.
massbank_ws_searchspectrum
toolshed.g2.bx.psu.edu/repos/fgiacomoni/massbank_ws_searchspectrum/massbank_ws_searchspectrum/2017-02-06
2017-02-06
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/fgiacomoni/massbank_ws_searchspectrum/massbank_ws_searchspectrum/2017-02-06 (this tool)
massbank_ws_searchspectrum
Requirements (dependencies defined in the <requirements> tag set)
name version type
perl-soap-lite 1.19 package
perl-lwp-simple 6.15 package
perl-libwww-perl 6.15 package
perl-html-template 2.95 package
perl-uri 1.71 package
perl-text-csv 1.33 package
perl-json 2.90 package
Functional tests
name inputs outputs required files
Test-1 advanced|mz_tolerance|unit: unit
col_pcgroup: 14
header|nbheader: 1
advanced|advanced_settings: True
score_threshold: 0.5
intensity|col_int: 7
advanced|server: JP
advanced|max: 20
advanced|cutoff: 50
mode: Positive
variableMetadata_in: input01_69-pcgroups-mz-relative_int.tabular
advanced|instruments: all
col_mz: 1
intensity|colint_choice: True
advanced|mz_tolerance|tolerance: 0.3
variableMetadata_out: out_test01.tabular
massBankSpectraOutWeb: out_test01.html
massBankSpectraOutXlsx: out_test01.txt
input01_69-pcgroups-mz-relative_int.tabular
out_test01.tabular
out_test01.html
out_test01.txt