Galaxy |

Repository revision

Revision: 1:02abff468d60

Repository 'mesmer'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/goeckslab/mesmer

Mesmer tool metadata

Miscellaneous

Name: Mesmer

Description: Mesmer for whole-cell segmentation of multiplexed tissue imaging data

Id: mesmer

Guid: toolshed.g2.bx.psu.edu/repos/goeckslab/mesmer/mesmer/0.3.1+galaxy1

Version: 0.3.1+galaxy1

Version command string: python /usr/src/app/run_app.py mesmer --help

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/goeckslab/mesmer/mesmer/0.12.3+galaxy2

toolshed.g2.bx.psu.edu/repos/goeckslab/mesmer/mesmer/0.3.1+galaxy1 (this tool)

toolshed.g2.bx.psu.edu/repos/goeckslab/mesmer/mesmer/0.3.1+galaxy0

mesmer

Requirements (dependencies defined in the <requirements> tag set)

No requirements defined

Functional tests

name

inputs

outputs

required files

Test-1

nuclear_image: test.tiff
compartment: nuclear
image_mpp: 0.65
squeeze: True
membrane_select|membrane_segment: False

name: value

test.tiff
value