| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/homer_findmotifsgenome/homer_findMotifsGenome/4.11+galaxy3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/homer_findmotifsgenome/homer_findMotifsGenome/4.11+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/homer_findmotifsgenome/homer_findMotifsGenome/4.11+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/homer_findmotifsgenome/homer_findMotifsGenome/4.11+galaxy0 |
| homer_findMotifsGenome |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| homer | 4.11 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: fake_phix_peaks.bed genome|all_fasta_source: phiX174 genome|source: installed |
name: value name: value |
fake_phix_peaks.bed value |
| Test-2 |
input: CTCF_peaks_shifted.bed genome|fasta: chr2_subset.fa.gz genome|source: history |
name: value name: value |
CTCF_peaks_shifted.bed chr2_subset.fa.gz value |
| Test-3 |
input: CTCF_peaks_shifted.bed genome|fasta: chr2_subset.fa.gz genome|mask: True genome|source: history |
name: value name: value |
CTCF_peaks_shifted.bed chr2_subset.fa.gz value |
| Test-4 |
input: CTCF_peaks_shifted.bed genome|fasta: chr2_subset.fa.gz genome|source: history nomotif: True motif_options|mset: plants |
name: value |
CTCF_peaks_shifted.bed chr2_subset.fa.gz value |
| Test-5 |
input: fake_phix_peaks.bed genome|all_fasta_source: phiX174 genome|source: installed background|bg: fake_phix_peaks.subset.bed background|use: withbg |
name: value |
fake_phix_peaks.bed fake_phix_peaks.subset.bed value |
| Test-6 |
input: fake_phix_peaks.bed genome|all_fasta_source: phiX174 genome|source: installed background|bg: fake_phix_peaks.subset.bed background|use: chopify |
name: value |
fake_phix_peaks.bed fake_phix_peaks.subset.bed value |