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Repository revision

Revision: 8:1d201e8378b3

Repository 'hicexplorer_hicvalidatelocations'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations

hicValidateLocations tool metadata

Miscellaneous

Name: hicValidateLocations

Description: validate detected loops with protein peaks.

Id: hicexplorer_hicvalidatelocations

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.7.2+galaxy0

Version: 3.7.2+galaxy0

Version command string: hicValidateLocations --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.7.2+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.6+galaxy1

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.6+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.4.3.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.4.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.3.1.0

hicexplorer_hicvalidatelocations

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.7.2

package

Functional tests

name

inputs

outputs

required files

Test-1

data: hicValidateLocations/loops_1.bedgraph
validationData: hicValidateLocations/GSM935376_hg19_Gm12878_Smc3.narrowPeak
resolution: 10000
prefixLoop_selector: add

name: value
name: value

hicValidateLocations/loops_1.bedgraph
hicValidateLocations/GSM935376_hg19_Gm12878_Smc3.narrowPeak
value