| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/vapor/vapor/1.0.2+galaxy3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/vapor/vapor/1.0.2+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/vapor/vapor/1.0.2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/vapor/vapor/1.0.2+galaxy0 |
| vapor |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| vapor | 1.0.2 | package |
| gawk | 5.1.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fasta_file: HA_sample.fa fastq_input|fastq_single: test_reads.fq fastq_input|fastq_input_selector: single |
name: value |
HA_sample.fa test_reads.fq value |
| Test-2 |
fasta_file: HA_sample.fa fastq_input|fastq_single: test_reads.fq fastq_input|fastq_input_selector: single return_best_n: 0 |
name: value |
HA_sample.fa test_reads.fq value |
| Test-3 |
fasta_file: HA_sample.fa fastq_input|fastq1: test_reads.fq fastq_input|fastq2: test_reads2.fq fastq_input|fastq_input_selector: paired |
name: value |
HA_sample.fa test_reads.fq test_reads2.fq value |
| Test-4 |
fasta_file: HA_sample.fa fastq_input|fastq_single: test_reads.fastqsanger.gz fastq_input|fastq_input_selector: single |
name: value |
HA_sample.fa test_reads.fastqsanger.gz value |
| Test-5 |
fasta_file: HA_sample.fa fastq_input|fastq_single: test_reads.fq fastq_input|fastq_input_selector: single opt|kmer_length: 29 opt|threshold: 0.5 opt|min_kmer_cov: 7 opt|min_kmer_prop: 0.5 opt|top_seed_frac: 0.5 |
name: value |
HA_sample.fa test_reads.fq value |
| Test-6 |
fasta_file: HA_sample.fa fastq_input|fastq_single: test_reads.fq fastq_input|fastq_input_selector: single output_type: fasta return_best_n: 3 |
name: value |
HA_sample.fa test_reads.fq value |