| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/customize_metaphlan_database/customize_metaphlan_database/4.0.6+galaxy3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/customize_metaphlan_database/customize_metaphlan_database/4.0.6+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/customize_metaphlan_database/customize_metaphlan_database/4.0.6+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/customize_metaphlan_database/customize_metaphlan_database/4.0.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/customize_metaphlan_database/customize_metaphlan_database/4.0.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/customize_metaphlan_database/customize_metaphlan_database/4.0.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/customize_metaphlan_database/customize_metaphlan_database/3.0.14+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/customize_metaphlan_database/customize_metaphlan_database/3.0.13+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/customize_metaphlan_database/customize_metaphlan_database/3.0.9+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/customize_metaphlan_database/customize_metaphlan_database/3.0.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/customize_metaphlan_database/customize_metaphlan_database/3.0.7+galaxy0 |
| customize_metaphlan_database |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| metaphlan | 4.0.6 | package |
| seqtk | 1.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in_fasta: test-db-without-one-marker.fasta in_json: test-db-without-one-marker.json op|marker_seq: marker_sequence.fasta op|name: 13076__A0A2I1PE66__CYJ72_10760 op|m_length: 540 op|genomes_0|g_length: 2411251 op|genomes_0|gca: GCA_002847845 op|genomes_0|k_name: Bacteria op|genomes_0|k_id: 2 op|genomes_0|p_name: Bacilli op|genomes_0|p_id: 1239 op|genomes_0|c_name: Negativicutes op|genomes_0|c_id: 91061 op|genomes_0|o_name: Lactobacillales op|genomes_0|o_id: 186826 op|genomes_0|f_name: Aerococcaceae op|genomes_0|f_id: 186827 op|genomes_0|g_name: Globicatella op|genomes_0|g_id: 13075 op|genomes_0|s_name: Globicatella_sanguinis op|genomes_0|s_id: 13076 op|genomes_0|t_name: GCA_002847845 op|operation: add_marker |
name: value name: value |
test-db-without-one-marker.fasta test-db-without-one-marker.json marker_sequence.fasta value |
| Test-2 |
in_fasta: test-db.fasta in_json: test-db.json op|markers: marker.txt op|operation: remove_markers |
name: value name: value |
test-db.fasta test-db.json marker.txt value |
| Test-3 |
in_fasta: test-db.fasta in_json: test-db.json op|markers: marker.txt op|operation: keep_markers |
name: value name: value |
test-db.fasta test-db.json marker.txt value |