Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.0.31+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.0.31+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.0.14+galaxy2.9.1 |
proteinortho |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
proteinortho | 6.0.31 | package |
diamond | 2.0.9 | package |
blast | 2.12.0 | package |
blat | 36 | package |
last | 1256 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_files: ['L.fasta', 'C.fasta', 'C2.fasta', 'E.fasta', 'M.fasta'] |
name: value name: value name: value |
L.fasta C.fasta C2.fasta E.fasta M.fasta value |
Test-2 |
input_files: ['L.fasta', 'C.fasta', 'C2.fasta', 'E.fasta', 'M.fasta'] evalue: 1 conn: 1 more_options|cov: 42 more_options|sim: 42 more_options|identity: 42 more_options|selfblast: True more_options|singles: True |
name: value name: value name: value |
L.fasta C.fasta C2.fasta E.fasta M.fasta value |
Test-3 |
input_files: ['L.fasta', 'C.fasta', 'C2.fasta', 'E.fasta', 'M.fasta'] synteny|input_files_syn: ['L.gff', 'C.gff', 'C2.gff', 'E.gff', 'M.gff'] synteny|synteny_options: specified |
name: value name: value name: value |
L.fasta C.fasta C2.fasta E.fasta M.fasta L.gff C.gff C2.gff E.gff M.gff value |
Test-4 |
input_files: ['L.fasta', 'C.fasta', 'C2.fasta', 'E.fasta', 'M.fasta'] p: blastp |
name: value name: value name: value |
L.fasta C.fasta C2.fasta E.fasta M.fasta value |
Test-5 |
input_files: ['L.fasta', 'C.fasta', 'C2.fasta', 'E.fasta', 'M.fasta'] p: autoblast |
name: value name: value name: value |
L.fasta C.fasta C2.fasta E.fasta M.fasta value |
Test-6 |
input_files: ['L.fasta', 'C.fasta', 'C2.fasta', 'E.fasta', 'M.fasta'] p: lastp |
name: value name: value name: value |
L.fasta C.fasta C2.fasta E.fasta M.fasta value |
Test-7 |
input_files: ['L.fasta', 'C.fasta', 'C2.fasta', 'E.fasta', 'M.fasta'] p: blastp |
name: value name: value name: value |
L.fasta C.fasta C2.fasta E.fasta M.fasta value |