Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.3.0+galaxy7 |
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.3.0+galaxy6 (this tool) |
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.3.0+galaxy5 |
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.3.0+galaxy4 |
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.3.0+galaxy3 |
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.3.0+galaxy1 |
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.3.0+galaxy0 |
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.2.4+galaxy2 |
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.2.4+galaxy1 |
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.2.4+galaxy0 |
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.2.2+galaxy2 |
ramclustr |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
r-ramclustr | 1.3.0 | package |
bioconductor-xcms | 3.20.0 | package |
r-arrow | 9.0.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
filetype|xcms|input_xcms: test1_xcmsObj_1.rdata.xcms.fillpeaks filetype|required|maxt: 259.8 filetype|type_choice: xcms msp_output_details|mzdec: 4 extras|ExpDes: lc-ramclustr-define-experiment.csv |
name: value name: value |
test1_xcmsObj_1.rdata.xcms.fillpeaks lc-ramclustr-define-experiment.csv value |
Test-2 |
filetype|xcms|input_xcms: test2_xcmsObj_2.rdata.xcms.fillpeaks filetype|required|maxt: 78.4 filetype|type_choice: xcms msp_output_details|mzdec: 4 |
name: value name: value |
test2_xcmsObj_2.rdata.xcms.fillpeaks value |
Test-3 |
filetype|ms_csv|ms: test3_csv_test-input_1_2.csv filetype|required|st: 5.0 filetype|required|maxt: 1 filetype|type_choice: csv performance|blocksize: 1000 performance|mult: 1 |
name: value name: value |
test3_csv_test-input_1_2.csv value |
Test-4 |
filetype|ms_csv|ms: test3_csv_test-input_1_2.csv filetype|type_choice: csv |
name: value |
test3_csv_test-input_1_2.csv value |
Test-5 |
filetype|ms_dataframe|ms1_featureDefinitions: test5_df_featureDefinitions_input.parquet filetype|ms_dataframe|ms1_featureValues: test5_df_featureValues_input.parquet filetype|type_choice: recetox-aplcms |
name: value |
test5_df_featureDefinitions_input.parquet test5_df_featureValues_input.parquet value |
Test-6 |
filetype|xcms|input_xcms: test6.fillpeaks filetype|type_choice: xcms msp_output_details|mzdec: 4 extras|quality_control: True filtering|feature_filter_blanks|blank_tag: Blanc filtering|feature_filter_blanks|filter_blanks: TRUE filtering|feature_filter_cv|filter_cv: TRUE |
name: value name: value name: value |
test6.fillpeaks value |